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    Eight pruning deep learning models for low storage and high-speed COVID-19 computed tomography lung segmentation and heatmap-based lesion localization: A multicenter study using COVLIAS 2.0

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    Author
    Agarwal M
    Agarwal S
    Saba L
    Chabert GL
    Gupta S
    Carriero A
    Pasche A
    Danna P
    Mehmedovic A
    Faa G
    Shrivastava S
    Jain K
    Jain H
    Jujaray T
    Singh IM
    Turk M
    Chadha PS
    Johri AM
    Khanna NN
    Mavrogeni S
    Laird JR
    Sobel DW
    Miner M
    Balestrieri A
    Sfikakis PP
    Tsoulfas G
    Misra DP
    Agarwal V
    Kitas GD
    Teji JS
    Al-Maini M
    Dhanjil SK
    Nicolaides A
    Sharma A
    Rathore V
    Fatemi M
    Alizad A
    Krishnan PR
    Yadav RR
    Nagy F
    Kincses ZT
    Ruzsa Z
    Naidu S
    Viskovic K
    Kalra MK
    Suri JS.
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    Publication date
    2022-06-25
    Subject
    Communicable diseases
    
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    Abstract
    Background:�COVLIAS 1.0: an automated lung segmentation was designed for COVID-19 diagnosis. It has issues related to storage space and speed. This study shows that COVLIAS 2.0 uses pruned AI (PAI) networks for improving both storage and speed, wiliest high performance on lung segmentation and lesion localization. Method:�ology: The proposed study uses multicenter ?9,000 CT slices from two different nations, namely, CroMed from Croatia (80 patients, experimental data), and NovMed from Italy (72 patients, validation data). We hypothesize that by using pruning and evolutionary optimization algorithms, the size of the AI models can be reduced significantly, ensuring optimal performance. Eight different pruning techniques (i) differential evolution (DE), (ii) genetic algorithm (GA), (iii) particle swarm optimization algorithm (PSO), and (iv) whale optimization algorithm (WO) in two deep learning frameworks (i) Fully connected network (FCN) and (ii) SegNet were designed. COVLIAS 2.0 was validated using "Unseen NovMed" and benchmarked against MedSeg. Statistical tests for stability and reliability were also conducted. Results:�Pruning algorithms (i) FCN-DE, (ii) FCN-GA, (iii) FCN-PSO, and (iv) FCN-WO showed improvement in storage by 92.4%, 95.3%, 98.7%, and 99.8% respectively when compared against solo FCN, and (v) SegNet-DE, (vi) SegNet-GA, (vii) SegNet-PSO, and (viii) SegNet-WO showed improvement by 97.1%, 97.9%, 98.8%, and 99.2% respectively when compared against solo SegNet. AUC > 0.94 (p < 0.0001) on CroMed and > 0.86 (p < 0.0001) on NovMed data set for all eight EA model. PAI <0.25 s per image. DenseNet-121-based Grad-CAM heatmaps showed validation on glass ground opacity lesions. Conclusions:�Eight PAI networks that were successfully validated are five times faster, storage efficient, and could be used in clinical settings.
    Citation
    Comput Biol Med. 2022 Jul;146:105571. doi: 10.1016/j.compbiomed.2022.105571. Epub 2022 May 21.
    Type
    Article
    Handle
    http://hdl.handle.net/20.500.14200/3249
    DOI
    10.1016/j.compbiomed.2022.105571
    PMID
    35751196
    Journal
    Computers in Biology and Medicine
    Publisher
    Elsevier
    ae974a485f413a2113503eed53cd6c53
    10.1016/j.compbiomed.2022.105571
    Scopus Count
    Collections
    2022

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